As you probably would have noticed in the BTS look of the finale by CBS that Daniel Dae Kim mentioned that there were last minute changes to the scipt or scenes that were not mentioned until the day of filming.
Well, Peter Lenkov mentioned in an interview with Mike Buck in Hawaii after the episode that the scene between McGarrett & the Gov at her house where McGarrett finds out the truth about her was the scene that was written into the script on the day it was filmed.
You can hear the whole interview here and also 50 Undercover Blogger Officer808 thoughts on the episode as well with his chat with Peter Lenkov on the same page.
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